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missing data
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reset
1
vote
3
replies
1.5k
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Missing Clinical LIHC Data
Missing Data
TCGAbiolinks
Kaplan-Meier
LIHC
Xenabrowser
4.5 years ago
jam526
• 0
0
votes
1
reply
1.3k
views
DESeq2 paired design with missing samples and multiple conditions
deseq2
paired samples
missing data
multiple treatments
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
greg.deakin
• 0
0
votes
13
replies
2.4k
views
handling missing data (NA) for methylaion analysis in Limma
limma
missing data
methylation
normalization
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
mheydarpour
▴ 10
2
votes
5
replies
2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
wewolski
▴ 10
0
votes
0
replies
821
views
imputing data using pcaMethods with large amounts of missing data in rows
pcamethods
missing data
7.1 years ago
eli-sava
• 0
0
votes
1
reply
1.0k
views
Web CellHTS2 data upload
cellhts2
upload
missing data
updated 8.3 years ago by
Joseph Barry
▴ 160 • written 8.3 years ago by
zmorehouse
• 0
3
votes
5
replies
7.6k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
8.4 years ago • updated 8.0 years ago
dvillarlozano
▴ 10
1
vote
1
reply
1.0k
views
filter rows by missing values frequency
missing data
filter
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
rgescudero
• 0
0
votes
0
replies
1.5k
views
Possible methodologies for missing value imputation of continuous variables in a data frame in R
missing data
missing value imputation
impute
MICE
bioconductor
8.6 years ago
svlachavas
▴ 830
0
votes
1
reply
1.4k
views
workflowInstall issues; missing Windows binary
software error
missing data
workflowinstall
9.0 years ago
anoll2
• 0
0
votes
0
replies
1.3k
views
baySeq missing data
bayseq
missing data
9.0 years ago
k.w.lau
• 0
0
votes
4
replies
2.8k
views
how to handle missing data for SampleTable in DESeq2
deseq2
sample_table
missing data
updated 5.3 years ago by
g.wang2
• 0 • written 9.1 years ago by
anpham
▴ 60
12 results • Page
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Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
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